{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Overview of database files\n", "\n", "Since we do not store the data files on GitHub it can be difficult to verify mirrors. He we will add a summary of all data files." ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "This notebook was run with herschelhelp_internal version: \n", "017bb1e (Mon Jun 18 14:58:59 2018 +0100)\n", "This notebook was executed on: \n", "2018-06-25 13:41:17.916762\n" ] } ], "source": [ "from herschelhelp_internal import git_version\n", "print(\"This notebook was run with herschelhelp_internal version: \\n{}\".format(git_version()))\n", "import datetime\n", "print(\"This notebook was executed on: \\n{}\".format(datetime.datetime.now()))" ] }, { "cell_type": "code", "execution_count": 2, "metadata": { "collapsed": true }, "outputs": [], "source": [ "from astropy.table import Table, Column\n", "from astropy import units as u\n", "from astropy.io import fits\n", " \n", "import numpy as np\n", "\n", "import glob\n", "import hashlib\n", "\n", "import os\n", "import time\n", "\n", "import yaml\n", "\n", "\n", "from pathlib import Path\n", "\n" ] }, { "cell_type": "code", "execution_count": 3, "metadata": { "collapsed": true }, "outputs": [], "source": [ "SUFFIX = os.environ.get('SUFFIX', time.strftime(\"_%Y%m%d\"))\n", "MAKE_HASHES = False" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## list of fits files\n", "\n", "The information about the product is stored in a yml file which points to the various actual data files. Here we use a template." ] }, { "cell_type": "code", "execution_count": 4, "metadata": { "collapsed": true }, "outputs": [], "source": [ "#fits_file_list = glob.glob('../dmu*/*/data/*.fits')\n", "#fits_file_list = glob.glob('../dmu*/*/data/**/*.fits', recursive=True)" ] }, { "cell_type": "code", "execution_count": 5, "metadata": { "collapsed": true }, "outputs": [], "source": [ "yml_files = glob.glob('../**/*.yml', recursive=True)" ] }, { "cell_type": "code", "execution_count": 6, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "['../dmu0/dmu0_NEP-Spitzer/meta_survey.yml',\n", " '../dmu0/dmu0_SSDF/meta_survey.yml',\n", " '../dmu0/dmu0_VICS82/meta_survey.yml',\n", " '../dmu0/dmu0_SHELA/meta_survey.yml',\n", " '../dmu0/dmu0_CFHTLS/meta_survey.yml',\n", " '../dmu0/dmu0_SDWFS/meta_survey.yml',\n", " '../dmu0/dmu0_UKIDSS-LAS/meta_survey.yml',\n", " '../dmu0/dmu0_UKIDSS-UDS/meta_survey.yml',\n", " '../dmu0/dmu0_CFHTLenS/meta_survey.yml',\n", " '../dmu0/dmu0_UHS/meta_survey.yml',\n", " '../dmu0/dmu0_GOODS-ACS/meta_survey.yml',\n", " '../dmu0/dmu0_VIPERS-MLS/meta_survey.yml',\n", " '../dmu0/dmu0_2MASS-extended-sources/meta_survey.yml',\n", " '../dmu0/dmu0_SpARCS/meta_survey.yml',\n", " '../dmu0/dmu0_2MASS-point-sources/meta_survey.yml',\n", " '../dmu0/dmu0_CANDELS-UDS/meta_survey.yml',\n", " '../dmu0/dmu0_IBIS/meta_survey.yml',\n", " '../dmu0/dmu0_IRAC-EGS/meta_survey.yml',\n", " '../dmu0/dmu0_DataFusion-Spitzer/meta_survey.yml',\n", " '../dmu0/dmu0_NDWFS/meta_survey.yml',\n", " '../dmu0/dmu0_DES/meta_survey.yml',\n", " '../dmu0/dmu0_Ultradeep-Ks-GOODS-N/meta_survey.yml',\n", " '../dmu0/dmu0_SPLASH-SXDF/meta_survey.yml',\n", " '../dmu0/dmu0_SpIES/meta_survey.yml',\n", " '../dmu0/dmu0_CANDELS-EGS/meta_survey.yml',\n", " '../dmu0/dmu0_COMBO-17/meta_survey.yml',\n", " '../dmu0/dmu0_DEEP2/meta_survey.yml',\n", " '../dmu0/dmu0_VISTA-VHS/meta_survey.yml',\n", " '../dmu0/dmu0_zBootes/meta_survey.yml',\n", " '../dmu0/dmu0_SpUDS/meta_survey.yml',\n", " '../dmu0/dmu0_Fireworks/meta_survey.yml',\n", " '../dmu0/dmu0_SDSS-S82/meta_survey.yml',\n", " '../dmu0/dmu0_VISTA-VIDEO-private/meta_survey.yml',\n", " '../dmu0/dmu0_ATLAS/meta_survey.yml',\n", " '../dmu0/dmu0_LegacySurvey/meta_survey.yml',\n", " '../dmu0/dmu0_SXDS/meta_survey.yml',\n", " '../dmu0/dmu0_RCSLenS/meta_survey.yml',\n", " '../dmu0/dmu0_UKIDSS-DXS_DR10plus/meta_survey.yml',\n", " '../dmu0/dmu0_KPNO-FLS/meta_survey.yml',\n", " '../dmu0/dmu0_IAC_Stripe82_Legacy_Project/meta_survey.yml',\n", " '../dmu0/dmu0_CANDELS-GOODS-N/meta_survey.yml',\n", " '../dmu0/dmu0_SIMES/meta_survey.yml',\n", " '../dmu0/dmu0_DECaLS/meta_survey.yml',\n", " '../dmu0/dmu0_CANDELS-3D-HST/meta_survey.yml',\n", " '../dmu0/dmu0_PanSTARRS1-3SS/meta_survey.yml',\n", " '../dmu0/dmu0_VISTA-VIKING/meta_survey.yml',\n", " '../dmu0/dmu0_ESIS-VOICE/meta_survey.yml',\n", " '../dmu0/dmu0_ESIS-VOICE/meta_survey_2.yml',\n", " '../dmu0/dmu0_KIDS/meta_survey.yml',\n", " '../dmu0/dmu0_CFHT-WIRDS/meta_survey.yml',\n", " '../dmu0/dmu0_SDSS-DR13/meta_survey.yml',\n", " '../dmu0/dmu0_Hawaii-HDFN/meta_survey.yml',\n", " '../dmu0/dmu0_AKARI-NEP-OptNIR/meta_survey.yml',\n", " '../dmu0/dmu0_INTWFC/meta_survey.yml',\n", " '../dmu0/dmu0_HSC/meta_survey.yml',\n", " '../dmu0/dmu0_CANDELS-GOODS-S/meta_survey.yml',\n", " '../dmu0/dmu0_COSMOS2015/meta_survey.yml',\n", " '../dmu0/dmu0_AEGIS/meta_survey.yml',\n", " '../dmu24/dmu24_filters/meta_main.yml',\n", " '../dmu16/dmu16_allwise/meta_main.yml',\n", " '../dmu16/dmu16_allwise/meta_survey.yml',\n", " '../dmu18/dmu18_ELAIS-N1/meta_main.yml',\n", " '../dmu18/dmu18_CDFS-SWIRE/meta_main.yml',\n", " '../dmu12/dmu12-lofar-bootes-150-mhz-cat-ids-2017/meta_survey.yml',\n", " '../dmu12/dmu12-lofar-bootes-150-mhz-cat-ids-2017/meta_main.yml',\n", " '../meta/meta_main.yml',\n", " '../dmu17/dmu17_HELP_Legacy_Maps/CDFS-SWIRE/meta_main.yml',\n", " '../dmu17/dmu17_HELP_Legacy_Maps/XMM-LSS/SWIRE/meta_main.yml',\n", " '../dmu17/dmu17_HELP_Legacy_Maps/XMM-LSS/SPUDS/meta_main.yml',\n", " '../dmu17/dmu17_HELP_Legacy_Maps/Lockman-SWIRE/meta_main.yml',\n", " '../dmu17/dmu17_HELP_Legacy_Maps/ELAIS-S1/meta_main.yml',\n", " '../dmu17/dmu17_HELP_Legacy_Maps/Bootes/meta_main.yml',\n", " '../dmu17/dmu17_HELP_Legacy_Maps/xFLS/meta_main.yml',\n", " '../dmu17/dmu17_HELP_Legacy_Maps/ELAIS-N1/meta_main.yml',\n", " '../TEMPLATES/meta_survey.yml',\n", " '../TEMPLATES/meta_main.yml',\n", " '../dmu22/meta_survey.yml',\n", " '../dmu22/meta_main.yml',\n", " '../dmu1/meta_main.yml',\n", " '../dmu1/dmu1_ml_GAMA-15/meta_main.yml',\n", " '../dmu1/dmu1_ml_Bootes/meta_main.yml',\n", " '../dmu1/dmu1_ml_AKARI-SEP/meta_main.yml',\n", " '../dmu1/dmu1_ml_EGS/meta_main.yml',\n", " '../dmu1/dmu1_ml_SGP/meta_main.yml',\n", " '../dmu1/dmu1_ml_ELAIS-N1/meta_main.yml',\n", " '../dmu1/dmu1_ml_GAMA-12/meta_main.yml',\n", " '../dmu1/dmu1_ml_NGP/meta_main.yml',\n", " '../dmu1/dmu1_ml_Herschel-Stripe-82/meta_main.yml',\n", " '../dmu1/dmu1_ml_COSMOS/meta_main.yml',\n", " '../dmu1/dmu1_ml_SPIRE-NEP/meta_main.yml',\n", " '../dmu1/dmu1_ml_AKARI-NEP/meta_main.yml',\n", " '../dmu1/dmu1_ml_XMM-LSS/meta_main.yml',\n", " '../dmu1/dmu1_ml_xFLS/meta_main.yml',\n", " '../dmu1/dmu1_ml_ELAIS-N2/meta_main.yml',\n", " '../dmu1/dmu1_ml_SA13/meta_main.yml',\n", " '../dmu1/dmu1_ml_SSDF/meta_main.yml',\n", " '../dmu1/dmu1_ml_ELAIS-S1/meta_main.yml',\n", " '../dmu1/dmu1_ml_XMM-13hr/meta_main.yml',\n", " '../dmu1/dmu1_ml_Lockman-SWIRE/meta_main.yml',\n", " '../dmu1/dmu1_ml_CDFS-SWIRE/meta_main.yml',\n", " '../dmu1/dmu1_ml_GAMA-09/meta_main.yml',\n", " '../dmu1/dmu1_ml_HDF-N/meta_main.yml',\n", " '../dmu26/dmu26_XID+SPIRE_CDFS-SWIRE/meta_main.yml',\n", " '../dmu26/dmu26_XID+SPIRE_CDFS-SWIRE/meta_survey.yml',\n", " '../dmu26/dmu26_XID+PACS_CDFS-SWIRE/meta_main.yml',\n", " '../dmu26/dmu26_XID+PACS_CDFS-SWIRE/meta_survey.yml',\n", " '../dmu26/dmu26_XID+MIPS_ELAIS-S1/meta_main.yml',\n", " '../dmu26/dmu26_XID+MIPS_ELAIS-S1/meta_survey.yml',\n", " '../dmu26/dmu26_XID+PACS_ELAIS-N1/meta_survey_2.yml',\n", " '../dmu26/dmu26_XID+PACS_ELAIS-N1/meta_survey_1.yml',\n", " '../dmu26/dmu26_XID+PACS_ELAIS-N1/meta_main.yml',\n", " '../dmu26/dmu26_XID+SPIRE_Lockman-SWIRE/meta_survey.yml',\n", " '../dmu26/dmu26_XID+SPIRE_Lockman-SWIRE/meta_main.yml',\n", " '../dmu26/dmu26_XID+SPIRE_ELAIS-S1/meta_survey.yml',\n", " '../dmu26/dmu26_XID+SPIRE_ELAIS-S1/meta_main.yml',\n", " '../dmu26/dmu26_XID+SPIRE_GAMA-09/meta_main.yml',\n", " '../dmu26/dmu26_XID+SPIRE_GAMA-12/meta_main.yml',\n", " '../dmu26/dmu26_XID+MIPS_CDFS-SWIRE/meta_survey.yml',\n", " '../dmu26/dmu26_XID+MIPS_CDFS-SWIRE/meta_main.yml',\n", " '../dmu26/dmu26_XID+MIPS_ELAIS-N1/meta_survey_2.yml',\n", " '../dmu26/dmu26_XID+MIPS_ELAIS-N1/meta_survey_1.yml',\n", " '../dmu26/dmu26_XID+MIPS_ELAIS-N1/meta_main.yml',\n", " '../dmu26/dmu26_XID+PACS_Lockman-SWIRE/meta_main.yml',\n", " '../dmu26/dmu26_XID+PACS_Lockman-SWIRE/meta_survey.yml',\n", " '../dmu26/dmu26_XID+PACS_COSMOS/meta_main.yml',\n", " '../dmu26/dmu26_XID+PACS_COSMOS/meta_survey.yml',\n", " '../dmu26/dmu26_XID+SPIRE_GAMA-15/meta_main.yml',\n", " '../dmu26/dmu26_XID+SPIRE_ELAIS-N1/meta_survey_2.yml',\n", " '../dmu26/dmu26_XID+SPIRE_ELAIS-N1/meta_survey_1.yml',\n", " '../dmu26/dmu26_XID+SPIRE_ELAIS-N1/meta_main.yml',\n", " '../dmu26/dmu26_XID+MIPS_COSMOS/meta_main.yml',\n", " '../dmu26/dmu26_XID+MIPS_COSMOS/meta_survey.yml',\n", " '../dmu26/dmu26_XID+MIPS_Lockman-SWIRE/meta_survey.yml',\n", " '../dmu26/dmu26_XID+MIPS_Lockman-SWIRE/meta_main.yml',\n", " '../dmu26/dmu26_XID+PACS_ELAIS-S1/meta_main.yml',\n", " '../dmu26/dmu26_XID+PACS_ELAIS-S1/meta_survey.yml',\n", " '../dmu26/dmu26_XID+SPIRE_COSMOS/meta_main.yml',\n", " '../dmu26/dmu26_XID+SPIRE_COSMOS/meta_survey.yml',\n", " '../dmu5/dmu5_gaia_flagging_script/meta_main.yml',\n", " '../dmu14/dmu14_GALEX-GCAT/meta_survey.yml',\n", " '../dmu14/dmu14_GALEX-GCAT/meta_main.yml',\n", " '../dmu32/columns.yml',\n", " '../dmu32/dmu32_SA13/meta_main.yml',\n", " '../dmu32/dmu32_Bootes/meta_main.yml',\n", " '../dmu32/dmu32_xFLS/meta_main.yml',\n", " '../dmu32/dmu32_GAMA-15/meta_main.yml',\n", " '../dmu32/dmu32_GAMA-12/meta_main.yml',\n", " '../dmu32/dmu32_HDF-N/meta_main.yml',\n", " '../dmu32/dmu32_NGP/meta_main.yml',\n", " '../dmu32/dmu32_ELAIS-N2/meta_main.yml',\n", " '../dmu32/dmu32_EGS/meta_main.yml',\n", " '../dmu32/dmu32_COSMOS/meta_main.yml',\n", " '../dmu32/dmu32_SGP/meta_main.yml',\n", " '../dmu32/dmu32_Lockman-SWIRE/meta_main.yml',\n", " '../dmu32/dmu32_XMM-LSS/meta_main.yml',\n", " '../dmu32/dmu32_ELAIS-N1/meta_main.yml',\n", " '../dmu32/dmu32_AKARI-SEP/meta_main.yml',\n", " '../dmu32/dmu32_GAMA-09/meta_main.yml',\n", " '../dmu32/dmu32_AKARI-NEP/meta_main.yml',\n", " '../dmu32/dmu32_ELAIS-S1/meta_main.yml',\n", " '../dmu32/dmu32_XMM-13hr/meta_main.yml',\n", " '../dmu32/dmu32_Herschel-Stripe-82/meta_main.yml',\n", " '../dmu32/dmu32_CDFS-SWIRE/meta_main.yml',\n", " '../dmu32/dmu32_SPIRE-NEP/meta_main.yml',\n", " '../dmu32/dmu32_SSDF/meta_main.yml',\n", " '../dmu13/dmu13-jvla-cosmos-3-ghz-cat-ids-smolcic-2017/meta_main.yml',\n", " '../dmu13/dmu13-lockman-hole-project-1.4-ghz-cat-ids/meta_main.yml',\n", " '../dmu19/meta_survey.yml',\n", " '../dmu8/dmu8_TGSS_allsky_cat/meta_main.yml',\n", " '../dmu8/dmu8_TGSS_allsky_cat/meta_survey.yml',\n", " '../dmu8/dmu8_lofar_LockmanHole_cat/meta_main.yml',\n", " '../dmu8/dmu8_lofar_LockmanHole_cat/meta_survey.yml',\n", " '../dmu8/dmu8_lofar_HATLAS_cat/meta_survey.yml',\n", " '../dmu8/dmu8_lofar_HATLAS_cat/meta_main.yml',\n", " '../dmu2/meta_main.yml']" ] }, "execution_count": 6, "metadata": {}, "output_type": "execute_result" } ], "source": [ "yml_files" ] }, { "cell_type": "code", "execution_count": 7, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/70101890.70101890-0.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/60095871.60095871-11.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/60095871.60095871-33.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/60095871.60095871-3.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/40041240.40041240-0.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/50061580.50061580-0.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/60095871.60095871-22.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/40032010.40032010-0.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/60081170.60081170-0.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/50066830.50066830-0.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/60095871.60095871-4.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/60095871.60095871-66.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/60081160.60081160-0.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/60095871.60095871-5.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/40005010.40005010-0.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/60095871.60095871-6.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/60095871.60095871-55.MIPS.1.moc.fits\n", "Problem opening /mnt/hedam/dmu_products/dmu17/dmu17_HELP-SEIP-maps/XMM-LSS/mocs/60095871.60095871-9.MIPS.1.moc.fits\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "WARNING: File may have been truncated: actual file length (1144710016) is smaller than the expected size (1162370880) [astropy.io.fits.file]\n", "WARNING: non-ASCII characters are present in the FITS file header and have been replaced by \"?\" characters [astropy.io.fits.util]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Problem opening /mnt/hedam/dmu_products/dmu19/dmu19_HerMES/data/hers-helms-xmm_itermap_20160623_PSW.fits\n" ] } ], "source": [ "\n", "\n", "ROOT = Path(\"/mnt/hedam/dmu_products/\").absolute()\n", "#ROOT = Path(\"/Users/rs548/GitHub/dmu_products/\").absolute()\n", "\n", "\n", "FIELDS = {\n", " \"akari-nep\": \"AKARI-NEP\",\n", " \"akari_nep\": \"AKARI-NEP\",\n", " \"akari-sep\": \"AKARI-SEP\",\n", " \"akari_sep\": \"AKARI-SEP\",\n", " \"bootes\": \"Bootes\",\n", " \"cdfs-swire\": \"CDFS-SWIRE\",\n", " \"cosmos\": \"COSMOS\",\n", " \"egs\": \"EGS\",\n", " \"elais-n1\": \"ELAIS-N1\",\n", " \"elais_n1\": \"ELAIS-N1\",\n", " \"elais-n2\": \"ELAIS-N2\",\n", " \"elais_n2\": \"ELAIS-N2\",\n", " \"elais-s1\": \"ELAIS-S1\",\n", " \"elais_s1\": \"ELAIS-S1\",\n", " \"gama-09\": \"GAMA-09\",\n", " \"gama09\": \"GAMA-09\",\n", " \"gama_09\": \"GAMA-09\",\n", " \"gama-12\": \"GAMA-12\",\n", " \"gama12\": \"GAMA-12\",\n", " \"gama_12\": \"GAMA-12\",\n", " \"gama-15\": \"GAMA-15\",\n", " \"gama15\": \"GAMA-15\",\n", " \"gama_15\": \"GAMA-15\",\n", " \"hdf-n\": \"HDF-N\",\n", " \"hdfn\": \"HDF-N\",\n", " \"hdf_n\": \"HDF-N\",\n", " \"herschel-stripe-82\": \"Herschel-Stripe-82\",\n", " \"herschel_stripe_82\": \"Herschel-Stripe-82\",\n", " \"hs82\": \"Herschel-Stripe-82\",\n", " \"lockman-swire\": \"Lockman-SWIRE\",\n", " \"lockman_swire\": \"Lockman-SWIRE\",\n", " \"ngp\": \"HATLAS-NGP\",\n", " \"hatlas-ngp\": \"HATLAS-NGP\",\n", " \"hatlas_ngp\": \"HATLAS-NGP\",\n", " \"sa13\": \"SA13\",\n", " \"sgp\": \"HATLAS-SGP\",\n", " \"hatlas-sgp\": \"HATLAS-SGP\",\n", " \"hatlas_sgp\": \"HATLAS-SGP\",\n", " \"spire-nep\": \"SPIRE-NEP\",\n", " \"spire_nep\": \"SPIRE-NEP\",\n", " \"ssdf\": \"SSDF\",\n", " \"xfls\": \"xFLS\",\n", " \"xmm-13hr\": \"XMM-13hr\",\n", " \"xmm13hr\": \"XMM-13hr\",\n", " \"xmm-lss\": \"XMM-LSS\",\n", " \"xmmlss\": \"XMM-LSS\",\n", "}\n", "\n", "\n", "def get_meta_main(filename):\n", " file_path = Path(filename)\n", " for dir_ in file_path.absolute().parents:\n", " meta_main = dir_ / \"meta_main.yml\"\n", " if meta_main.exists():\n", " return meta_main.relative_to(ROOT)\n", " if dir_ == ROOT:\n", " return\n", "def get_meta_surveys(filename):\n", " meta_surveys = []\n", " file_path = Path(filename)\n", " for dir_ in file_path.absolute().parents:\n", " for filename in dir_.glob(\"meta_survey*.yml\"):\n", " meta_surveys.append(filename.relative_to(ROOT))\n", " if dir_ == ROOT:\n", " break\n", " return meta_surveys\n", "\n", "def get_field(filename):\n", " for field in FIELDS:\n", " if field in filename.lower():\n", " return FIELDS[field]\n", " return \"BROKEN\"\n", "\n", "def map_or_cat(filename):\n", " try:\n", " hdu_list = fits.open(filename)\n", " hdu = hdu_list[0]\n", " if type(hdu) == fits.PrimaryHDU:\n", " if len(hdu_list) == 1:\n", " return \"map\"\n", " else:\n", " hdu = hdu_list[1]\n", " if type(hdu) == fits.ImageHDU:\n", " return \"map\"\n", " elif type(hdu) in [fits.TableHDU, fits.BinTableHDU]:\n", " return \"catalogue\"\n", " else:\n", " return \"unknown\"\n", " except OSError:\n", " print(f\"Problem opening {filename}\")\n", "\n", "fits_file_list = []\n", "for root, directories, filenames in os.walk(ROOT):\n", " for filename in filenames:\n", " if (filename.endswith(\".fits\") and \"HELP_J\" not in filename\n", " and \"timeline\" not in root.lower()):\n", " fits_file_list.append(os.path.join(root, filename))\n", "\n", "\n", "files = []\n", "\n", "for f in fits_file_list:\n", " d = {}\n", " d['filename'] = str(Path(f).relative_to(ROOT))\n", " d['field'] = get_field(f)\n", "\n", " d['dmu'] = d['filename'].split(\"/\")[0]\n", " d['dmu_folder'] = d['filename'].split(\"/\")[1]\n", "\n", " meta_main = get_meta_main(f)\n", " d['meta_main'] = str(meta_main)\n", "\n", " meta_surveys = get_meta_surveys(f)\n", " d['meta_surveys'] = \", \".join(str(item) for item in meta_surveys)\n", "\n", " if \"dmu0\" not in f:\n", " if meta_main is not None:\n", " try:\n", " meta = yaml.load(open(ROOT / meta_main, \"r\"))\n", " bands = meta.get(\"Filters\", '')\n", " except yaml.scanner.ScannerError:\n", " bands = \"Broken meta_main.yml\"\n", " else:\n", " bands = \"No meta_main.yml\"\n", "\n", " else:\n", " bands = []\n", " for survey in meta_surveys:\n", " try:\n", " meta = yaml.load(open(ROOT / survey, \"r\"))\n", " b = meta.get(\"Filters\", '')\n", " if b is not None:\n", " bands.append(b)\n", " except yaml.scanner.ScannerError:\n", " bands.append(\"Broken meta_survey.xml\")\n", " bands = \", \".join(bands)\n", "\n", " d['bands'] = bands\n", "\n", " d['type'] = map_or_cat(f)\n", "\n", " files.append(d)\n", "\n", "Table(files)['dmu',\n", " 'dmu_folder',\n", " 'filename',\n", " 'field',\n", " 'type',\n", " 'bands',\n", " 'meta_main',\n", " 'meta_surveys'].write(\"fits_files.csv\", format=\"ascii.csv\")" ] }, { "cell_type": "code", "execution_count": 8, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "['/mnt/hedam/dmu_products/dmu23/dmu23_Lockman-SWIRE/data/Lockman_SWIRE-specz-v2.1.fits',\n", " '/mnt/hedam/dmu_products/dmu23/dmu23_Herschel-Stripe-82/data/HELP-SPECZ_Herschel-Stripe-82_20170202.fits',\n", " '/mnt/hedam/dmu_products/dmu23/dmu23_COSMOS/data/COSMOS-specz-v2.5-public_helpcoverage_helpid_20160512.fits',\n", " '/mnt/hedam/dmu_products/dmu23/dmu23_SSDF/data/SSDF-specz-v2.fits',\n", " 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'/mnt/hedam/dmu_products/dmu0/dmu0_CFHTLS/data/CFHTLS-DEEP_COSMOS_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_CFHTLS/data/CFHTLS-DEEP_COSMOS.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_CFHTLS/data/dmu0_CFHTLS_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_SDWFS/data/SDWFS-I2_20160531_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_SDWFS/data/SDWFS_MLselected_20160801.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_SDWFS/data/SDWFS_MLselected_20160801_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_SDWFS/data/SDWFS-I4_20160531_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_SDWFS/data/SDWFS-I2_20160531.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_SDWFS/data/SDWFS-I3_20160531_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_SDWFS/data/dmu0_SDWFS_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_SDWFS/data/SDWFS-I3_20160531.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_SDWFS/data/SDWFS-I1_20160531.fits',\n", " 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'/mnt/hedam/dmu_products/dmu0/dmu0_UHS/data/UHS-DR1_ELAIS-N1.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_UHS/data/UHS-DR1_EGS.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_UHS/data/UHS-DR1_SA13_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_UHS/data/UHS-DR1_ELAIS-N2_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_UHS/data/dmu0_UHS_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_UHS/data/UHS-DR1_xFLS.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_UHS/data/UHS-DR1_Bootes.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_UHS/data/UHS-DR1_NGP_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_UHS/data/UHS-DR1_XMM-13hr.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_GOODS-ACS/data/h_goods_sv_r2.0z_cat.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_GOODS-ACS/data/dmu0_GOODS-ACS_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_GOODS-ACS/data/h_goods_nv_r2.0z_cat.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_GOODS-ACS/data/h_goods_nz_r2.0z_cat.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_GOODS-ACS/data/h_goods_sz_r2.0z_cat_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_GOODS-ACS/data/h_goods_sz_r2.0z_cat.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_GOODS-ACS/data/h_goods_si_r2.0z_cat_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_GOODS-ACS/data/h_goods_sv_r2.0z_cat_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_GOODS-ACS/data/h_goods_sb_r2.0z_cat_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_GOODS-ACS/data/h_goods_sb_r2.0z_cat.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_GOODS-ACS/data/h_goods_nb_r2.0z_cat.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_GOODS-ACS/data/h_goods_nv_r2.0z_cat_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_GOODS-ACS/data/h_goods_ni_r2.0z_cat.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_GOODS-ACS/data/h_goods_ni_r2.0z_cat_MOC.fits',\n", " '/mnt/hedam/dmu_products/dmu0/dmu0_GOODS-ACS/data/h_goods_nz_r2.0z_cat_MOC.fits',\n", " 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'/mnt/hedam/dmu_products/dmu18/dmu18_PEP-DR1/data/pgh_GOODSN_green_Map.DR1.cov.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_PEP-DR1/data/pgh_GOODSS_red_Map.DR1.cov.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_PEP-DR1/data/pep_LH_green_Map.DR1.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_PEP-DR1/data/pep_EGS_red_Map.DR1.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_PEP-DR1/data/pgh_GOODSS_green_Library_Psf.DR1.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_PEP-DR1/data/pep_EGS_green_Map.DR1.err.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N1/data/ELAIS-N1-160um-psffromstack-model_20170608.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N1/data/ELAIS-N1-160um-cov_gls_20170608.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N1/data/ELAIS-N1-160um-img_noise_20170608.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N1/data/ELAIS-N1-100um-img_wgls_20170608.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N1/data/ELAIS-N1-160um-img_wgls_20170608.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N1/data/ELAIS-N1-100um-psffromstack-model_20170608.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N1/data/ELAIS-N1-100um-img_noise_20170608.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N1/data/ELAIS-N1-100um-cove_gls_20170608.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N1/data/ELAIS-N1-100um-psffromstack_20170608.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N1/data/ELAIS-N1-160um-psffromstack_20170608.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_NGP/data/NGP-100um-img_noise.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_NGP/data/NGP-160um-img_noise.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_NGP/data/NGP-160um-img_wgls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_NGP/data/NGP-100um-img_wgls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_NGP/data/NGP-100um-psffromstack-model.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_NGP/data/NGP-160um-psffromstack.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_NGP/data/NGP-100um-psffromstack.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_NGP/data/NGP-160um-cov_gls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_NGP/data/NGP-100um-cov_gls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_NGP/data/NGP-160um-psffromstack-model.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N2/data/ELAIS-N2-160um-img_wgls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N2/data/ELAIS-N2-100um-psffromstack-model.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N2/data/ELAIS-N2-100um-img_wgls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N2/data/ELAIS-N2-100um-psffromstack.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N2/data/ELAIS-N2-160um-psffromstack-model.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N2/data/ELAIS-N2-160um-psffromstack.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N2/data/ELAIS-N2-100um-img_noise.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-N2/data/ELAIS-N2-160um-img_noise.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_AKARI-SEP/data/Akari-SEP-160um-psffromstack-model.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_AKARI-SEP/data/Akari-SEP-160um-img_wgls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_AKARI-SEP/data/Akari-SEP-70um-psffromstack.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_AKARI-SEP/data/Akari-SEP-100um-cov_gls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_AKARI-SEP/data/Akari-SEP-100um-psffromstack.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_AKARI-SEP/data/Akari-SEP-160um-psffromstack.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_AKARI-SEP/data/Akari-SEP-100um-img_wgls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_AKARI-SEP/data/Akari-SEP-100um-img_noise.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_AKARI-SEP/data/Akari-SEP-70um-psffromstack-model.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_AKARI-SEP/data/Akari-SEP-100um-psffromstack-model.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_AKARI-SEP/data/Akari-SEP-160um-img_noise.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_AKARI-SEP/data/Akari-SEP-160um-cov_gls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_AKARI-SEP/data/Akari-SEP-70um-cov_gls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_AKARI-SEP/data/Akari-SEP-70um-img_wgls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_AKARI-SEP/data/Akari-SEP-70um-img_noise.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-S1/data/ELAIS-S1_PACS160_20160428_stacked_psf.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-S1/data/ELAIS-S1_PACS100_20160428_img_wgls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-S1/data/ELAIS-S1_PACS160_20160428_img_wgls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-S1/data/ELAIS-S1_PACS100_20160428_stacked_psf.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-S1/data/ELAIS-S1_PACS100_20160428_img_noise.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-S1/data/ELAIS-S1_PACS160_20160428_model_psf.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-S1/data/ELAIS-S1_PACS100_20160428_model_psf.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_ELAIS-S1/data/ELAIS-S1_PACS160_20160428_img_noise.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_XMM-LSS/data/XMM-LSS_PACS160_20160728_stacked_psf_160.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_XMM-LSS/data/XMM-LSS_PACS100_20160728_stacked_psf_100.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_XMM-LSS/data/XMM-LSS_PACS100_20160728_model_psf_100.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_XMM-LSS/data/XMM-LSS_PACS160_20160728_model_psf_160.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_XMM-LSS/data/XMM-LSS_PACS160_20160728_img_noise.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_XMM-LSS/data/XMM-LSS_PACS100_20160728_img_noise.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_XMM-LSS/data/XMM-LSS_PACS160_20160728_img_gls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_XMM-LSS/data/XMM-LSS_PACS100_20160728_img_wgls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_Bootes/data/Bootes-100um-psffromstack-model_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_Bootes/data/Bootes-100um-img_wgls_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_Bootes/data/Bootes-160um-img_noise_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_Bootes/data/Bootes-160um-img_wgls_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_Bootes/data/Bootes-160um-cov_gls_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_Bootes/data/Bootes-100um-cov_gls_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_Bootes/data/Bootes-100um-img_noise_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_Bootes/data/Bootes-160um-psffromstack-model_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_Bootes/data/Bootes-100um-psffromstack_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_Bootes/data/Bootes-160um-psffromstack_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_Bootes/data/old/Bootes-100um-wgls_20170103.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_Bootes/data/old/Bootes-160um-wgls_20170103.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/All_PACS_ObsIDs_on_HELP_coverage.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/XMM-LSS_PACS100_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/ELAIS-S1_PACS100_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/GAMA-12_PACS160_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/NGP_PACS160_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/GAMA-09_PACS100_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/EGS_PACS160_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/AKARI-SEP_PACS160_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/Bootes_PACS160_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/Lockman-SWIRE_PACS160_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/ELAIS-N2_PACS160_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/ELAIS-N1_PACS100_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/CDFS-SWIRE_PACS160_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/GAMA-15_PACS160_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/COSMOS_PACS160_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/AKARI-NEP_PACS100_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/CDFS-SWIRE_PACS100_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/ELAIS-N1_PACS160_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/ELAIS-N2_PACS100_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/Lockman-SWIRE_PACS100_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/AKARI-NEP_PACS160_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/COSMOS_PACS100_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/GAMA-15_PACS100_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/NGP_PACS100_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/GAMA-12_PACS100_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/ELAIS-S1_PACS160_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/XMM-LSS_PACS160_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/Bootes_PACS100_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/AKARI-SEP_PACS100_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/EGS_PACS100_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_HELP-PACS-maps/data/GAMA-09_PACS160_v0.9.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_GAMA-15/data/GAMA15-160um-cove_gls_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_GAMA-15/data/GAMA15-100um-cove_gls_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_GAMA-15/data/GAMA15-100um-psffromstack_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_GAMA-15/data/GAMA15-160um-img_noise_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_GAMA-15/data/GAMA15-160um-psffromstack_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_GAMA-15/data/GAMA15-160um-psffromstack-model_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_GAMA-15/data/GAMA15-100um-img_wgls_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_GAMA-15/data/GAMA15-160um-img_wgls_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_GAMA-15/data/GAMA15-100um-psffromstack-model_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_GAMA-15/data/GAMA15-100um-img_noise_20171002.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_GAMA-15/data/old/GAMA-15_PACS100_20160428_img_wgls.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_GAMA-15/data/old/GAMA-15_PACS100_20160428_stacked_psf.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_GAMA-15/data/old/GAMA-15_PACS160_20160428_img_noise.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_GAMA-15/data/old/GAMA-15_PACS100_20160428_model_psf.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_GAMA-15/data/old/GAMA-15_PACS160_20160428_model_psf.fits',\n", " '/mnt/hedam/dmu_products/dmu18/dmu18_GAMA-15/data/old/GAMA-15_PACS100_20160428_img_noise.fits',\n", " ...]" ] }, "execution_count": 8, "metadata": {}, "output_type": "execute_result" } ], "source": [ "fits_file_list" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Add hashes (takes a very long time)" ] }, { "cell_type": "code", "execution_count": 9, "metadata": { "collapsed": true }, "outputs": [], "source": [ "\n", "\n", "def hash_bytestr_iter(bytesiter, hasher, ashexstr=False):\n", " for block in bytesiter:\n", " hasher.update(block)\n", " return (hasher.hexdigest() if ashexstr else hasher.digest())\n", "\n", "def file_as_blockiter(afile, blocksize=65536):\n", " with afile:\n", " block = afile.read(blocksize)\n", " while len(block) > 0:\n", " yield block\n", " block = afile.read(blocksize)\n", " " ] }, { "cell_type": "code", "execution_count": 10, "metadata": { "collapsed": true }, "outputs": [], "source": [ "if MAKE_HASHES:\n", " hashes = [(fname, hash_bytestr_iter(file_as_blockiter(open(fname, 'rb')), hashlib.sha256()))\n", " for fname in Table(files)['filename']]\n", " file_overview.add_column(Column(data=[i[1] for i in hashes], name='hashes'))" ] } ], "metadata": { "kernelspec": { "display_name": "Python (herschelhelp_internal)", "language": "python", "name": "helpint" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.6.4" } }, "nbformat": 4, "nbformat_minor": 2 }