{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# ![HELP LOGO](https://avatars1.githubusercontent.com/u/7880370?s=100&v=4>)VO Simple Examples" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "The data available from the HELP consortium is available through the HELP Virtual Observatory Server. There are several catalogues available and basic queries can be made through a HTML form, using ADQL/SQL. For more complex queries, we recommend the use of pyvo. What follows are some examples using this module, with a specific focus on the CIGALE results for the COSMOS and ELAIS-N1 field.\n", "\n", "Alternatively, head to HeDaM and download the full fits files directly. The link can be found in the main 'README' of the github." ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "### pyvo - Download and installation" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Try this website: https://pyvo.readthedocs.io/en/latest/ \n", "\n", "You should just be able to install using pip." ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "### Examples" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "First, we must set up the service object :" ] }, { "cell_type": "code", "execution_count": 2, "metadata": { "collapsed": true }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "WARNING: W35: None:2:47707: W35: 'value' attribute required for INFO elements [astropy.io.votable.tree]\n", "WARNING: W27: None:2:48059: W27: COOSYS deprecated in VOTable 1.2 [astropy.io.votable.tree]\n", "WARNING: W06: None:38:1318: W06: Invalid UCD 'src.redsfhit': Unknown word 'src.redsfhit' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:132517: W06: Invalid UCD 'phot.flux;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:132803: W06: Invalid UCD 'stat.error;phot.flux;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:132996: W06: Invalid UCD 'phot.flux;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:133351: W06: Invalid UCD 'stat.error;phot.flux;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:133553: W06: Invalid UCD 'phot.mag;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:133838: W06: Invalid UCD 'stat.error;phot.mag;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:134029: W06: Invalid UCD 'phot.mag;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:134383: W06: Invalid UCD 'stat.error;phot.mag;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:134582: W06: Invalid UCD 'meta.code.qual;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' (suppressing further warnings of this type...) [astropy.io.votable.tree]\n" ] } ], "source": [ "# Import the module\n", "import pyvo as vo\n", "# Setting up the service object \n", "service = vo.dal.TAPService(\"https://herschel-vos.phys.sussex.ac.uk/__system__/tap/run/tap\")" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Then we can try downloading the data. Queries are sent using the ADQL language, which is based on SQL. Some useful links for basic queries:\n", "\n", "https://www.gaia.ac.uk/data/gaia-data-release-1/adql-cookbook\n", "http://tapvizier.u-strasbg.fr/adql/help.html\n", "\n", "There are certain input fields and output fields that work specifically with the HELP datasets, which can be found here:\n", "\n", "https://herschel-vos.phys.sussex.ac.uk/herschelhelp/q/cone/info\n", "\n", "\n", "The query below selects 10 sources from the main HELP catalogue within a defined search radius within the COSMOS field (as defined by the chosen RA and Dec). The result displays their RA, Dec and stellar masses from CIGALE:" ] }, { "cell_type": "code", "execution_count": 115, "metadata": {}, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "WARNING: W35: None:2:764: W35: 'value' attribute required for INFO elements [astropy.io.votable.tree]\n", "WARNING: W27: None:2:1116: W27: COOSYS deprecated in VOTable 1.2 [astropy.io.votable.tree]\n" ] } ], "source": [ "# Downloading the data\n", "resultset = service.search(\n", " \"SELECT TOP 10 ra, dec, cigale_mstar FROM herschelhelp.main WHERE 1=CONTAINS(POINT('ICRS', ra, dec),\" +\n", " \"CIRCLE('ICRS',\"+str(150.0)+\", \"+str(2.35)+\", 0.025 ))\"\n", ")\n" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Various information is encoded within the downloaded table: " ] }, { "cell_type": "code", "execution_count": 140, "metadata": { "scrolled": true }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ " - Keys: dict_keys(['server', 'query', 'src_res', 'src_table', 'QUERY_STATUS', 'citation'])\n", " - Server used to download the data: https://herschel-vos.phys.sussex.ac.uk\n", " - The query sent - this includes details of all the columns returned, which is particularly useful if * is used instead of specifying columns: SELECT ra, dec, cigale_mstar FROM herschelhelp.main WHERE herschelhelp.main.field = 'ELAIS-N1' AND herschelhelp.main.cigale_mstar IS NOT NULL LIMIT 1000000\n", " - Resource inforation: Contains traces from resource herschelhelp/q\n", " - Information on the source table: Contains traces from table herschelhelp.main\n", " - Did the query work? OK\n", " - Citation: https://herschel-vos.phys.sussex.ac.uk/tableinfo/herschelhelp.main\n" ] } ], "source": [ "keys = resultset.infos.keys()\n", "print(\" - Keys: \", keys)\n", "server = resultset.infos['server']\n", "print(\" - Server used to download the data: \", server)\n", "query = resultset.infos['query']\n", "print(\" - The query sent - this includes details of all the columns returned, which is particularly useful if * is used instead of specifying columns: \", query)\n", "src = resultset.infos['src_res']\n", "print(\" - Resource inforation: \", src)\n", "table = resultset.infos['src_table']\n", "print(\" - Information on the source table: \", table)\n", "yesno = resultset.infos['QUERY_STATUS']\n", "print(\" - Did the query work? \", yesno)\n", "cita = resultset.infos['citation']\n", "print(\" - Citation: \", cita)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "The resulting table can be accessed as an Astropy table:" ] }, { "cell_type": "code", "execution_count": 121, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ " ra dec cigale_mstar\n", " deg deg Msun \n", "------------------ ------------------ ------------\n", " 149.985827541585 2.3295548291189498 --\n", "149.98517171899101 2.33014869158335 --\n", "149.98567771899101 2.33002169158335 --\n", " 149.986950399064 2.3293979761682801 --\n", " 149.987236718991 2.3301936915833501 --\n", "149.98178171899099 2.33379869158335 --\n", " 149.982222897837 2.3336755537237601 --\n", "149.98033296301699 2.3359708718071799 --\n", " 149.981787718991 2.3350976915833499 --\n", " 149.982416718991 2.3360796915833499 --\n", "['ra', 'dec', 'cigale_mstar']\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ "WARNING: AstropyDeprecationWarning: Using the table property is deprecated. Please use se to_table() instead. [pyvo.dal.query]\n" ] } ], "source": [ "mytable = resultset.table\n", "cols = resultset.table.colnames\n", "print(mytable)\n", "print(cols)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Note that the 'cigale_mstar' column is empty. This is fine, not all sources have CIGALE results. Below are some examples of some different queries, including an example to deal with empty rows:" ] }, { "cell_type": "code", "execution_count": 125, "metadata": { "collapsed": true }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "WARNING: W35: None:2:47704: W35: 'value' attribute required for INFO elements [astropy.io.votable.tree]\n", "WARNING: W27: None:2:48056: W27: COOSYS deprecated in VOTable 1.2 [astropy.io.votable.tree]\n", "WARNING: W06: None:38:1318: W06: Invalid UCD 'src.redsfhit': Unknown word 'src.redsfhit' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:132517: W06: Invalid UCD 'phot.flux;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:132803: W06: Invalid UCD 'stat.error;phot.flux;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:132996: W06: Invalid UCD 'phot.flux;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:133351: W06: Invalid UCD 'stat.error;phot.flux;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:133553: W06: Invalid UCD 'phot.mag;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:133838: W06: Invalid UCD 'stat.error;phot.mag;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:134029: W06: Invalid UCD 'phot.mag;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:134383: W06: Invalid UCD 'stat.error;phot.mag;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' [astropy.io.votable.tree]\n", "WARNING: W06: None:38:134582: W06: Invalid UCD 'meta.code.qual;em.opt.100-200nm': Unknown word 'em.opt.100-200nm' (suppressing further warnings of this type...) [astropy.io.votable.tree]\n", "WARNING: AstropyDeprecationWarning: Using the table property is deprecated. Please use se to_table() instead. [pyvo.dal.query]\n" ] }, { "data": { "text/html": [ "<Table masked=True length=20>\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "
fieldhelp_idradechp_idxebvredshiftzspeczspec_qualzspec_association_flagpointsourcenessf_90prime_gferr_90prime_gf_ap_90prime_gferr_ap_90prime_gm_90prime_gmerr_90prime_gm_ap_90prime_gmerr_ap_90prime_gflag_90prime_gf_90prime_rferr_90prime_rf_ap_90prime_rferr_ap_90prime_rm_90prime_rmerr_90prime_rm_ap_90prime_rmerr_ap_90prime_rflag_90prime_rf_90prime_zferr_90prime_zf_ap_90prime_zferr_ap_90prime_zm_90prime_zmerr_90prime_zm_ap_90prime_zmerr_ap_90prime_zflag_90prime_zf_acs_f435wferr_acs_f435wf_ap_acs_f435wferr_ap_acs_f435wm_acs_f435wmerr_acs_f435wm_ap_acs_f435wmerr_ap_acs_f435wflag_acs_f435wf_acs_f606wferr_acs_f606wf_ap_acs_f606wferr_ap_acs_f606wm_acs_f606wmerr_acs_f606wm_ap_acs_f606wmerr_ap_acs_f606wflag_acs_f606wf_acs_f775wferr_acs_f775wf_ap_acs_f775wferr_ap_acs_f775wm_acs_f775wmerr_acs_f775wm_ap_acs_f775wmerr_ap_acs_f775wflag_acs_f775wf_acs_f814wferr_acs_f814wf_ap_acs_f814wferr_ap_acs_f814wm_acs_f814wmerr_acs_f814wm_ap_acs_f814wmerr_ap_acs_f814wflag_acs_f814wf_acs_f850lpferr_acs_f850lpf_ap_acs_f850lpferr_ap_acs_f850lpm_acs_f850lpmerr_acs_f850lpm_ap_acs_f850lpmerr_ap_acs_f850lpflag_acs_f850lpf_bessell_bferr_bessell_bf_ap_bessell_bferr_ap_bessell_bm_bessell_bmerr_bessell_bm_ap_bessell_bmerr_ap_bessell_bflag_bessell_bf_bessell_iferr_bessell_if_ap_bessell_iferr_ap_bessell_im_bessell_imerr_bessell_im_ap_bessell_imerr_ap_bessell_iflag_bessell_if_bessell_rferr_bessell_rf_ap_bessell_rferr_ap_bessell_rm_bessell_rmerr_bessell_rm_ap_bessell_rmerr_ap_bessell_rflag_bessell_rf_bessell_uferr_bessell_uf_ap_bessell_uferr_ap_bessell_um_bessell_umerr_bessell_um_ap_bessell_umerr_ap_bessell_uflag_bessell_uf_bessell_vferr_bessell_vf_ap_bessell_vferr_ap_bessell_vm_bessell_vmerr_bessell_vm_ap_bessell_vmerr_ap_bessell_vflag_bessell_vf_cfht12k_bferr_cfht12k_bf_ap_cfht12k_bferr_ap_cfht12k_bm_cfht12k_bmerr_cfht12k_bm_ap_cfht12k_bmerr_ap_cfht12k_bflag_cfht12k_bf_cfht12k_iferr_cfht12k_if_ap_cfht12k_iferr_ap_cfht12k_im_cfht12k_imerr_cfht12k_im_ap_cfht12k_imerr_ap_cfht12k_iflag_cfht12k_if_cfht12k_rferr_cfht12k_rf_ap_cfht12k_rferr_ap_cfht12k_rm_cfht12k_rmerr_cfht12k_rm_ap_cfht12k_rmerr_ap_cfht12k_rflag_cfht12k_rf_decam_gferr_decam_gf_ap_decam_gferr_ap_decam_gm_decam_gmerr_decam_gm_ap_decam_gmerr_ap_decam_gflag_decam_gf_decam_iferr_decam_if_ap_decam_iferr_ap_decam_im_decam_imerr_decam_im_ap_decam_imerr_ap_decam_iflag_decam_if_decam_rferr_decam_rf_ap_decam_rferr_ap_decam_rm_decam_rmerr_decam_rm_ap_decam_rmerr_ap_decam_rflag_decam_rf_decam_yferr_decam_yf_ap_decam_yferr_ap_decam_ym_decam_ymerr_decam_ym_ap_decam_ymerr_ap_decam_yflag_decam_yf_decam_zferr_decam_zf_ap_decam_zferr_ap_decam_zm_decam_zmerr_decam_zm_ap_decam_zmerr_ap_decam_zflag_decam_zf_galex_fuvferr_galex_fuvf_ap_galex_fuvferr_ap_galex_fuvm_galex_fuvmerr_galex_fuvm_ap_galex_fuvmerr_ap_galex_fuvflag_galex_fuvf_galex_nuvferr_galex_nuvf_ap_galex_nuvferr_ap_galex_nuvm_galex_nuvmerr_galex_nuvm_ap_galex_nuvmerr_ap_galex_nuvflag_galex_nuvf_gpc1_gferr_gpc1_gf_ap_gpc1_gferr_ap_gpc1_gm_gpc1_gmerr_gpc1_gm_ap_gpc1_gmerr_ap_gpc1_gflag_gpc1_gf_gpc1_iferr_gpc1_if_ap_gpc1_iferr_ap_gpc1_im_gpc1_imerr_gpc1_im_ap_gpc1_imerr_ap_gpc1_iflag_gpc1_if_gpc1_rferr_gpc1_rf_ap_gpc1_rferr_ap_gpc1_rm_gpc1_rmerr_gpc1_rm_ap_gpc1_rmerr_ap_gpc1_rflag_gpc1_rf_gpc1_yferr_gpc1_yf_ap_gpc1_yferr_ap_gpc1_ym_gpc1_ymerr_gpc1_ym_ap_gpc1_ymerr_ap_gpc1_yflag_gpc1_yf_gpc1_zferr_gpc1_zf_ap_gpc1_zferr_ap_gpc1_zm_gpc1_zmerr_gpc1_zm_ap_gpc1_zmerr_ap_gpc1_zflag_gpc1_zf_hawki_kferr_hawki_kf_ap_hawki_kferr_ap_hawki_km_hawki_kmerr_hawki_km_ap_hawki_kmerr_ap_hawki_kflag_hawki_kf_irac_i1ferr_irac_i1f_ap_irac_i1ferr_ap_irac_i1m_irac_i1merr_irac_i1m_ap_irac_i1merr_ap_irac_i1flag_irac_i1f_irac_i2ferr_irac_i2f_ap_irac_i2ferr_ap_irac_i2m_irac_i2merr_irac_i2m_ap_irac_i2merr_ap_irac_i2flag_irac_i2f_irac_i3ferr_irac_i3f_ap_irac_i3ferr_ap_irac_i3m_irac_i3merr_irac_i3m_ap_irac_i3merr_ap_irac_i3flag_irac_i3f_irac_i4ferr_irac_i4f_ap_irac_i4ferr_ap_irac_i4m_irac_i4merr_irac_i4m_ap_irac_i4merr_ap_irac_i4flag_irac_i4f_isaac_kferr_isaac_kf_ap_isaac_kferr_ap_isaac_km_isaac_kmerr_isaac_km_ap_isaac_kmerr_ap_isaac_kflag_isaac_kf_egacam_gferr_egacam_gf_ap_egacam_gferr_ap_egacam_gm_egacam_gmerr_egacam_gm_ap_egacam_gmerr_ap_egacam_gflag_egacam_gf_egacam_iferr_egacam_if_ap_egacam_iferr_ap_egacam_im_egacam_imerr_egacam_im_ap_egacam_imerr_ap_egacam_iflag_egacam_if_egacam_rferr_egacam_rf_ap_egacam_rferr_ap_egacam_rm_egacam_rmerr_egacam_rm_ap_egacam_rmerr_ap_egacam_rflag_egacam_rf_egacam_uferr_egacam_uf_ap_egacam_uferr_ap_egacam_um_egacam_umerr_egacam_um_ap_egacam_umerr_ap_egacam_uflag_egacam_uf_egacam_yferr_egacam_yf_ap_egacam_yferr_ap_egacam_ym_egacam_ymerr_egacam_ym_ap_egacam_ymerr_ap_egacam_yflag_egacam_yf_egacam_zferr_egacam_zf_ap_egacam_zferr_ap_egacam_zm_egacam_zmerr_egacam_zm_ap_egacam_zmerr_ap_egacam_zflag_egacam_zf_ips_24ferr_ips_24f_ap_ips_24ferr_ap_ips_24m_ips_24merr_ips_24m_ap_ips_24merr_ap_ips_24flag_ips_24f_t_gferr_t_gf_ap_t_gferr_ap_t_gm_t_gmerr_t_gm_ap_t_gmerr_ap_t_gflag_t_gf_t_iferr_t_if_ap_t_iferr_ap_t_im_t_imerr_t_im_ap_t_imerr_ap_t_iflag_t_if_t_rferr_t_rf_ap_t_rferr_ap_t_rm_t_rmerr_t_rm_ap_t_rmerr_ap_t_rflag_t_rf_t_uferr_t_uf_ap_t_uferr_ap_t_um_t_umerr_t_um_ap_t_umerr_ap_t_uflag_t_uf_t_zferr_t_zf_ap_t_zferr_ap_t_zm_t_zmerr_t_zm_ap_t_zmerr_ap_t_zflag_t_zf_oircs_kferr_oircs_kf_ap_oircs_kferr_ap_oircs_km_oircs_kmerr_oircs_km_ap_oircs_kmerr_ap_oircs_kflag_oircs_kf_oircs_ksferr_oircs_ksf_ap_oircs_ksferr_ap_oircs_ksm_oircs_ksmerr_oircs_ksm_ap_oircs_ksmerr_ap_oircs_ksflag_oircs_ksf_osaic_bferr_osaic_bf_ap_osaic_bferr_ap_osaic_bm_osaic_bmerr_osaic_bm_ap_osaic_bmerr_ap_osaic_bflag_osaic_bf_osaic_iferr_osaic_if_ap_osaic_iferr_ap_osaic_im_osaic_imerr_osaic_im_ap_osaic_imerr_ap_osaic_iflag_osaic_if_osaic_rferr_osaic_rf_ap_osaic_rferr_ap_osaic_rm_osaic_rmerr_osaic_rm_ap_osaic_rmerr_ap_osaic_rflag_osaic_rf_osaic_uferr_osaic_uf_ap_osaic_uferr_ap_osaic_um_osaic_umerr_osaic_um_ap_osaic_umerr_ap_osaic_uflag_osaic_uf_osaic_zferr_osaic_zf_ap_osaic_zferr_ap_osaic_zm_osaic_zmerr_osaic_zm_ap_osaic_zmerr_ap_osaic_zflag_osaic_zf_newfirm_hferr_newfirm_hf_ap_newfirm_hferr_ap_newfirm_hm_newfirm_hmerr_newfirm_hm_ap_newfirm_hmerr_ap_newfirm_hflag_newfirm_hf_newfirm_h1ferr_newfirm_h1f_ap_newfirm_h1ferr_ap_newfirm_h1m_newfirm_h1merr_newfirm_h1m_ap_newfirm_h1merr_ap_newfirm_h1flag_newfirm_h1f_newfirm_h2ferr_newfirm_h2f_ap_newfirm_h2ferr_ap_newfirm_h2m_newfirm_h2merr_newfirm_h2m_ap_newfirm_h2merr_ap_newfirm_h2flag_newfirm_h2f_newfirm_jferr_newfirm_jf_ap_newfirm_jferr_ap_newfirm_jm_newfirm_jmerr_newfirm_jm_ap_newfirm_jmerr_ap_newfirm_jflag_newfirm_jf_newfirm_j1ferr_newfirm_j1f_ap_newfirm_j1ferr_ap_newfirm_j1m_newfirm_j1merr_newfirm_j1m_ap_newfirm_j1merr_ap_newfirm_j1flag_newfirm_j1f_newfirm_j2ferr_newfirm_j2f_ap_newfirm_j2ferr_ap_newfirm_j2m_newfirm_j2merr_newfirm_j2m_ap_newfirm_j2merr_ap_newfirm_j2flag_newfirm_j2f_newfirm_j3ferr_newfirm_j3f_ap_newfirm_j3ferr_ap_newfirm_j3m_newfirm_j3merr_newfirm_j3m_ap_newfirm_j3merr_ap_newfirm_j3flag_newfirm_j3f_newfirm_kferr_newfirm_kf_ap_newfirm_kferr_ap_newfirm_km_newfirm_kmerr_newfirm_km_ap_newfirm_kmerr_ap_newfirm_kflag_newfirm_kf_nicmos_f110wferr_nicmos_f110wf_ap_nicmos_f110wferr_ap_nicmos_f110wm_nicmos_f110wmerr_nicmos_f110wm_ap_nicmos_f110wmerr_ap_nicmos_f110wflag_nicmos_f110wf_nicmos_f160wferr_nicmos_f160wf_ap_nicmos_f160wferr_ap_nicmos_f160wm_nicmos_f160wmerr_nicmos_f160wm_ap_nicmos_f160wmerr_ap_nicmos_f160wflag_nicmos_f160wf_omega2000_jferr_omega2000_jf_ap_omega2000_jferr_ap_omega2000_jm_omega2000_jmerr_omega2000_jm_ap_omega2000_jmerr_ap_omega2000_jflag_omega2000_jf_omega2000_ksferr_omega2000_ksf_ap_omega2000_ksferr_ap_omega2000_ksm_omega2000_ksmerr_omega2000_ksm_ap_omega2000_ksmerr_ap_omega2000_ksflag_omega2000_ksf_omegacam_gferr_omegacam_gf_ap_omegacam_gferr_ap_omegacam_gm_omegacam_gmerr_omegacam_gm_ap_omegacam_gmerr_ap_omegacam_gflag_omegacam_gf_omegacam_iferr_omegacam_if_ap_omegacam_iferr_ap_omegacam_im_omegacam_imerr_omegacam_im_ap_omegacam_imerr_ap_omegacam_iflag_omegacam_if_omegacam_rferr_omegacam_rf_ap_omegacam_rferr_ap_omegacam_rm_omegacam_rmerr_omegacam_rm_ap_omegacam_rmerr_ap_omegacam_rflag_omegacam_rf_omegacam_uferr_omegacam_uf_ap_omegacam_uferr_ap_omegacam_um_omegacam_umerr_omegacam_um_ap_omegacam_umerr_ap_omegacam_uflag_omegacam_uf_omegacam_zferr_omegacam_zf_ap_omegacam_zferr_ap_omegacam_zm_omegacam_zmerr_omegacam_zm_ap_omegacam_zmerr_ap_omegacam_zflag_omegacam_zf_pacs_greenferr_pacs_greenf_ap_pacs_greenferr_ap_pacs_greenm_pacs_greenmerr_pacs_greenm_ap_pacs_greenmerr_ap_pacs_greenflag_pacs_greenf_pacs_redferr_pacs_redf_ap_pacs_redferr_ap_pacs_redm_pacs_redmerr_pacs_redm_ap_pacs_redmerr_ap_pacs_redflag_pacs_redf_quirc_hkferr_quirc_hkf_ap_quirc_hkferr_ap_quirc_hkm_quirc_hkmerr_quirc_hkm_ap_quirc_hkmerr_ap_quirc_hkflag_quirc_hkf_sdss_gferr_sdss_gf_ap_sdss_gferr_ap_sdss_gm_sdss_gmerr_sdss_gm_ap_sdss_gmerr_ap_sdss_gflag_sdss_gf_sdss_iferr_sdss_if_ap_sdss_iferr_ap_sdss_im_sdss_imerr_sdss_im_ap_sdss_imerr_ap_sdss_iflag_sdss_if_sdss_rferr_sdss_rf_ap_sdss_rferr_ap_sdss_rm_sdss_rmerr_sdss_rm_ap_sdss_rmerr_ap_sdss_rflag_sdss_rf_sdss_uferr_sdss_uf_ap_sdss_uferr_ap_sdss_um_sdss_umerr_sdss_um_ap_sdss_umerr_ap_sdss_uflag_sdss_uf_sdss_zferr_sdss_zf_ap_sdss_zferr_ap_sdss_zm_sdss_zmerr_sdss_zm_ap_sdss_zmerr_ap_sdss_zflag_sdss_zf_spire_250ferr_spire_250f_ap_spire_250ferr_ap_spire_250m_spire_250merr_spire_250m_ap_spire_250merr_ap_spire_250flag_spire_250f_spire_350ferr_spire_350f_ap_spire_350ferr_ap_spire_350m_spire_350merr_spire_350m_ap_spire_350merr_ap_spire_350flag_spire_350f_spire_500ferr_spire_500f_ap_spire_500ferr_ap_spire_500m_spire_500merr_spire_500m_ap_spire_500merr_ap_spire_500flag_spire_500f_suprime_bferr_suprime_bf_ap_suprime_bferr_ap_suprime_bm_suprime_bmerr_suprime_bm_ap_suprime_bmerr_ap_suprime_bflag_suprime_bf_suprime_gferr_suprime_gf_ap_suprime_gferr_ap_suprime_gm_suprime_gmerr_suprime_gm_ap_suprime_gmerr_ap_suprime_gflag_suprime_gf_suprime_iferr_suprime_if_ap_suprime_iferr_ap_suprime_im_suprime_imerr_suprime_im_ap_suprime_imerr_ap_suprime_iflag_suprime_if_suprime_ia484ferr_suprime_ia484f_ap_suprime_ia484ferr_ap_suprime_ia484m_sup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" ], "text/plain": [ "\n", "field help_id ... flag_optnir_obs flag_optnir_det\n", " ... \n", "object object ... int16 int16 \n", "------ --------------------------- ... --------------- ---------------\n", "COSMOS HELP_J095711.278+005908.932 ... 3 1\n", "COSMOS HELP_J095711.970+005902.678 ... 3 1\n", "COSMOS HELP_J095711.507+005906.828 ... 3 1\n", "COSMOS HELP_J095711.636+005907.461 ... 3 1\n", "COSMOS HELP_J095711.752+005906.949 ... 3 1\n", "COSMOS HELP_J095711.438+005913.977 ... 3 1\n", "COSMOS HELP_J095710.894+005919.458 ... 3 1\n", "COSMOS HELP_J095711.154+005919.006 ... 3 0\n", "COSMOS HELP_J095712.057+005913.381 ... 3 0\n", "COSMOS HELP_J095710.884+005924.242 ... 3 1\n", "COSMOS HELP_J095711.252+005920.998 ... 3 1\n", "COSMOS HELP_J095711.200+005928.496 ... 3 1\n", "COSMOS HELP_J095711.360+005927.398 ... 3 1\n", "COSMOS HELP_J095711.762+005924.884 ... 3 1\n", "COSMOS HELP_J095711.842+005925.086 ... 3 1\n", "COSMOS HELP_J095711.675+005926.448 ... 3 1\n", "COSMOS HELP_J095711.689+005931.778 ... 3 1\n", "COSMOS HELP_J095710.463+005951.881 ... 3 1\n", "COSMOS HELP_J095710.792+005951.481 ... 3 1\n", "COSMOS HELP_J095711.649+005933.913 ... 3 1" ] }, "execution_count": 125, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# Return the data for 20 sources in the COSMOS field: all available columns, even if these do not contain values.\n", "resultset = service.search(\"SELECT TOP 20 * FROM herschelhelp.main WHERE herschelhelp.main.field='COSMOS'\")\n", "resultset.table" ] }, { "cell_type": "code", "execution_count": 126, "metadata": { "collapsed": true }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "WARNING: W35: None:2:767: W35: 'value' attribute required for INFO elements [astropy.io.votable.tree]\n", "WARNING: W27: None:2:1119: W27: COOSYS deprecated in VOTable 1.2 [astropy.io.votable.tree]\n", "WARNING: W06: None:2:2266: W06: Invalid UCD 'phys.dust;phys.luminosity': Unknown word 'phys.dust' [astropy.io.votable.tree]\n", "WARNING: AstropyDeprecationWarning: Using the table property is deprecated. Please use se to_table() instead. [pyvo.dal.query]\n" ] }, { "data": { "text/html": [ "<Table masked=True length=10>\n", "
\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "\n", "
radeccigale_dustlumin
degdegW
float64float64float64
246.9991471880570155.113613018499301--
246.99773563605755.114437479499301--
246.9998321690569955.116273360499299--
247.0251781750569955.164718342499299--
247.01995843705755.151093486499299--
247.0191532050569955.152713321499299--
247.01878525505755.152659522499299--
247.0184722440569955.152491255499299--
247.00993896705755.154941710499301--
247.01047652105755.153475718499301--
" ], "text/plain": [ "\n", " ra dec cigale_dustlumin\n", " deg deg W \n", " float64 float64 float64 \n", "------------------ ------------------ ----------------\n", "246.99914718805701 55.113613018499301 --\n", " 246.997735636057 55.114437479499301 --\n", "246.99983216905699 55.116273360499299 --\n", "247.02517817505699 55.164718342499299 --\n", " 247.019958437057 55.151093486499299 --\n", "247.01915320505699 55.152713321499299 --\n", " 247.018785255057 55.152659522499299 --\n", "247.01847224405699 55.152491255499299 --\n", " 247.009938967057 55.154941710499301 --\n", " 247.010476521057 55.153475718499301 --" ] }, "execution_count": 126, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# Return the ra, dec and cigale dust luminosities for 10 sources in the field ELAIS-N1\n", "resultset = service.search(\"SELECT TOP 10 ra, dec, cigale_dustlumin FROM herschelhelp.main WHERE herschelhelp.main.field='ELAIS-N1'\")\n", "resultset.table" ] }, { "cell_type": "code", "execution_count": 132, "metadata": { "scrolled": true }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "WARNING: W35: None:2:815: W35: 'value' attribute required for INFO elements [astropy.io.votable.tree]\n", "WARNING: W27: None:2:1167: W27: COOSYS deprecated in VOTable 1.2 [astropy.io.votable.tree]\n", "WARNING: AstropyDeprecationWarning: Using the table property is deprecated. Please use se to_table() instead. [pyvo.dal.query]\n", "IOPub data rate exceeded.\n", "The notebook server will temporarily stop sending output\n", "to the client in order to avoid crashing it.\n", "To change this limit, set the config variable\n", "`--NotebookApp.iopub_data_rate_limit`.\n" ] } ], "source": [ "# Return the ra, dec and cigale stellar masses for 200 sources in the field ELAIS-N1 where mstar has a value\n", "search1 = \"SELECT ra, dec, cigale_mstar FROM \"\n", "search2 = \"herschelhelp.main WHERE herschelhelp.main.field='ELAIS-N1' \" \n", "search3 = \"AND herschelhelp.main.cigale_mstar IS NOT NULL \" \n", "\n", "resultset = service.search(search1 + search2 + search3)\n", "resultset.table #.show_in_notebook()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Note that the data in the columns is masked, but can be treated as a normal Astropy table for plotting etc. To end this example notebook, I just save the table. I encourage you to examine other notebooks in this folder for examples on how to make use of the data provided by HELP." ] }, { "cell_type": "code", "execution_count": 139, "metadata": {}, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "WARNING: AstropyDeprecationWarning: Using the table property is deprecated. Please use se to_table() instead. [pyvo.dal.query]\n" ] } ], "source": [ "resultset.table.write('CIGALE_VOTable.fits', overwrite=True)" ] }, { "cell_type": "markdown", "metadata": { "collapsed": true }, "source": [ " ![HELP LOGO](https://avatars1.githubusercontent.com/u/7880370?s=75&v=4)\n", "\n", "**Authors**: [Jenifer Millard](http://www.cardiff.ac.uk/people/research-students/view/914013-millard-jenifer)\n", "\n", " \n", "For a full description of the database and how it is organised in to `dmu_products` please the top level [readme](../readme.md).\n", " \n", "The Herschel Extragalactic Legacy Project, ([HELP](http://herschel.sussex.ac.uk/)), is a [European Commission Research Executive Agency](https://ec.europa.eu/info/departments/research-executive-agency_en)\n", "funded project under the SP1-Cooperation, Collaborative project, Small or medium-scale focused research project, FP7-SPACE-2013-1 scheme, Grant Agreement\n", "Number 607254.\n", "\n", "[Acknowledgements](http://herschel.sussex.ac.uk/acknowledgements)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": true }, "outputs": [], "source": [] } ], "metadata": { "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.6.2" } }, "nbformat": 4, "nbformat_minor": 2 }